Documentation
Every step in the research journey in depth, from finding and managing data to analysis, whether running pipelines as batch processing jobs and interactive analysis in a Jupyter notebook.
Controlling costs (cloud storage, compute, and egress)
Workspaces: computational sandboxes for your research
Account setup & admin (including security)
Data in the cloud
- Accessing TCGA Controlled-Access workspaces in Terra
- Uploading to a workspace Google bucket
- Managing data with tables
- How to import metadata to a workspace data table
- Accessing and analysing custom cohorts with Data Explorer
- Broad Genomics: Downloading data from a Terra workspace See all 10 articles
Pipelining
- Get started running workflows
- Getting started with GATK workflows in the cloud FAQs
- Create, edit, and share a new workflow
- Finding the workflow (method) you need in the Methods Repository
- Configure a workflow to process your data
- Getting workflows up and running faster with a JSON file See all 12 articles
Visualization and Statistics (notebooks)
- Using the Bioconductor Docker image in Terra
- Terra's Jupyter Notebooks environment Part I: Key components
- Terra's Jupyter Notebooks environment Part II: Key operations
- Terra's Jupyter Notebooks environment Part III: Best Practices
- "Edit" and "Playground" Notebook Modes
- Protecting data from an old notebook runtime (cluster) See all 13 articles
Working with containers (Docker)
- Working with project-specific environments in Terra
- Docker tutorial: Custom runtime environments for Jupyter Notebooks
- Run GATK in a Docker container
- Install Docker and test that it works
- Publish a Docker container image to Google Container Registry (GCR)
- Make a Docker (container) image the easy way: using a base image See all 7 articles
Troubleshooting
- Troubleshooting Workflows: Tips and Tricks
- Is the Terra platform down?
- Billing: Total run cost "not available"
- Billing: Google Billing Account isn't showing up or has an error message
- Billing: Google Billing Account does not appear in the Billing Management screen
- Billing: Expired Google Billing Account trial See all 14 articles