Jason Cerrato

1. Community
2. General Discussion
3. Add Array[File] to Workspace Data table

Hey Justin, Thanks for writing in. The easiest way is to build the array from within the Data Table editor. If you upload a TSV with an array it probably turned into an awkward string like this: I...

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• August 19, 2021 19:43
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1. Community
2. Known Issues
3. basename() does not function as expected on DRS URIs

Hi Aisling, Thanks for flagging this up! I'll inform a member of our team and we'll file a bug report if needed. I'll get back to you as soon as I can. Kind regards, Jason

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• August 19, 2021 16:04
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1. Community
2. General Discussion
3. Is it possible to have a task directly modify an input file?

Hi Aisling, The team informed me of a workaround you can use for your situation. In your WDL, you can run the command sudo su - root prior to the commands that run that modify your input files. Thi...

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• August 18, 2021 18:25
• 0 votes

1. Community
2. Active Feature Requests
3. CWL Support in Terra

Hi Boyang, Thank you for writing in with your support. I will inform our product team so that they are aware. Kind regards, Jason

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• August 17, 2021 13:01
• 0 votes

1. Community
2. General Discussion
3. Error loading tumor BAM in Mutect2 workflow

Hi Tim, Glad to hear! if we can assist with anything else, please let us know. Kind regards, Jason

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• August 16, 2021 18:53
• 0 votes

1. Community
2. General Discussion
3. Error loading tumor BAM in Mutect2 workflow

Hi Tim, Thanks for writing in. I've migrated your inquiry to our General Discussion forum since it is not specifically about any of our featured workspaces. We'll be happy to assist you in finding ...

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• August 16, 2021 16:15
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1. Community
2. General Discussion
3. Is it possible to have a task directly modify an input file?

Hi Aisling, We believe your assessment is correct. You are able to edit the input files when the workflow is run locally because when they are localized locally they are localized under the topmed ...

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• August 16, 2021 14:00
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1. Community
2. General Discussion
3. Adding users to Terra billing project

Hi Marisa, Thanks for writing in. In order to add users to a billing project, they will indeed need to be registered in Terra. Once they visit https://app.terra.bio, sign in, and register, you shou...

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• August 16, 2021 13:21
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1. Community
2. General Discussion
3. Is it possible to have a task directly modify an input file?

Hi Aisling, Thanks for following up with those details. We're running a couple more tests and we'll get back to you as soon as we can with more information. Kind regards, Jason

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• August 12, 2021 18:58
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1. Community
2. General Discussion
3. Is it possible to have a task directly modify an input file?

Hi Aisling, Can you add an ls -l to your command to list the input permissions and run the workflow on your local Cromwell instance so we know what permissions are required to edit the input when r...

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• August 11, 2021 15:42
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