Need Help?

Search our documentation and community forum

Terra is a cloud-native platform for biomedical researchers to access data, run analysis tools, and collaborate.
Terra powers important scientific projects like FireCloud, AnVIL, and BioData Catalyst. Learn more.

basename() does not function as expected on DRS URIs

Answered

Comments

5 comments

  • Avatar
    Jason Cerrato

    Hi Aisling,

    Thanks for flagging this up! I'll inform a member of our team and we'll file a bug report if needed. I'll get back to you as soon as I can.

    Kind regards,

    Jason

    0
    Comment actions Permalink
  • Avatar
    Aisling O'Farrell

    Thanks for always being quick to respond Jason! It's much appreciated!

    0
    Comment actions Permalink
  • Avatar
    Jason Cerrato

    Hey Aisling,

    We were able to validate this behavior and we've filed a bug report. I'll be happy to reach out once I get word that the bug is fixed.

    Thanks so much for bringing this up and for posting your workaround so that other users of the platform can use it in the meantime! We really appreciate it.

    Kind regards,

    Jason

    0
    Comment actions Permalink
  • Avatar
    Jason Cerrato

    Hey Aisling O'Farrell,

    This bug is now fixed! See our release notes here: https://support.terra.bio/hc/en-us/articles/4407470708251

    Thanks again for reporting this.

    Kind regards,

    Jason

    0
    Comment actions Permalink
  • Avatar
    Jason Cerrato

    Hi Aisling,

    The workflows team has reverted to the previous version of Cromwell because our recent change for basename() was causing unexpected issues with outputs defined by String-type inputs: https://support.terra.bio/hc/en-us/community/posts/4407522454811

    I will follow up when a new fix has been implemented.

    Kind regards,

    Jason

    0
    Comment actions Permalink

Please sign in to leave a comment.

Powered by Zendesk