Sabrina Camp
Activity overview
Latest activity by Sabrina Camp
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Sabrina Camp commented,
Hi Samantha, I'm using an older base image intentionally. If I always use the most recent image, the packages installed would be newer/different versions which hurts the reproducibility in my resea...
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Sabrina Camp commented,
scamp@broadinstitute.org terra-10407992 saturn-30f54dde-6911-4c80-8c62-c94008e53c75 Issue started around 10 AM
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Sabrina Camp created a post,
Unable to create cloud environment for jupyter notebook
Hi! This morning I have been unable to create a new cloud environment to use for a Terra jupyter notebook. The environment shows it is being created for 10 minutes, and then it times out. I have tr...
- Sabrina Camp
- 2 followers
- 5 comments
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Sabrina Camp commented,
Update: The next time I started the cloud environment (today, after increasing the disk 3 days ago), the additional disk was present on /home/jupyter/notebooks. I'm not sure why there was a delay, ...
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Sabrina Camp created a post,
Increasing disk size on attached persistent disk does not increase space on /home/jupyter/notebooks
Hi, I am using a jupyter notebook on Terra, and I am trying to increase the amount of disk space available from 100 GB to 200 GB on /home/jupyter/notebooks where I am storing various files. I am s...
- Sabrina Camp
- 2 followers
- 3 comments
- 0 votes
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Sabrina Camp commented,
Hi, One of the workspaces is "vanallen-firecloud-nih/VanAllen_Master_Prostate_copy_germline_analysis". An example submission ID is 5226e3cf-fc15-4228-9f80-40c929db4512 with a few of the failed work...
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Sabrina Camp created a post,
Many different errors today
Hi! On different workflows, and in different workspaces, I have been getting an assortment of errors on jobs. These are the errors where the only solution (that I know of) is to rerun the workflow,...
- Sabrina Camp
- 2 followers
- 3 comments
- 0 votes
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Sabrina Camp commented,
Also on another note, I am trying to use bam files from the hg38 cohort and see this note on the dashboard of the workspace "hg38 TCGA and TARGET workspaces reference files by their GDC UUIDs. In o...
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Sabrina Camp created a post,
hg19 and hg38 TCGA workspaces
Hi! I was wondering if there is any documentation on the curation of the hg19 and hg38 controlled-access TCGA workspaces. I have found some samples in the GDC legacy archive that aren't listed in t...
- Sabrina Camp
- 4 followers
- 13 comments
- 0 votes
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Sabrina Camp commented,
I am running into the same issue as well. I would love to see this feature!
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- 2 votes