Sabrina Camp

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3. Increasing disk size on attached persistent disk does not increase space on /home/jupyter/notebooks

Update: The next time I started the cloud environment (today, after increasing the disk 3 days ago), the additional disk was present on /home/jupyter/notebooks. I'm not sure why there was a delay, ...

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• October 25, 2021 14:47
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Increasing disk size on attached persistent disk does not increase space on /home/jupyter/notebooks

Hi, I am using a jupyter notebook on Terra, and I am trying to increase the amount of disk space available from 100 GB to 200 GB on /home/jupyter/notebooks where I am storing various files.  I am s...

• Sabrina Camp
• October 22, 2021 20:54
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• 3 comments
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1. Community
2. General Discussion
3. Many different errors today

Hi, One of the workspaces is "vanallen-firecloud-nih/VanAllen_Master_Prostate_copy_germline_analysis". An example submission ID is 5226e3cf-fc15-4228-9f80-40c929db4512 with a few of the failed work...

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• November 09, 2020 16:09
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Many different errors today

Hi! On different workflows, and in different workspaces, I have been getting an assortment of errors on jobs. These are the errors where the only solution (that I know of) is to rerun the workflow,...

• Sabrina Camp
• November 05, 2020 19:04
• 2 followers
• 3 comments
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1. Community
2. General Discussion
3. hg19 and hg38 TCGA workspaces

Also on another note, I am trying to use bam files from the hg38 cohort and see this note on the dashboard of the workspace "hg38 TCGA and TARGET workspaces reference files by their GDC UUIDs. In o...

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• October 07, 2020 15:20
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hg19 and hg38 TCGA workspaces

Hi! I was wondering if there is any documentation on the curation of the hg19 and hg38 controlled-access TCGA workspaces. I have found some samples in the GDC legacy archive that aren't listed in t...

• Sabrina Camp
• October 07, 2020 15:04
• 4 followers
• 13 comments
• 0 votes

1. Community
2. Completed Feature Requests
3. Importing TSVs that contain arrays

I am running into the same issue as well. I would love to see this feature! 

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• September 23, 2020 17:22
• 2 votes

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2. General Discussion
3. error updating sample set table

Hi Samantha, I am trying to upload columns to the sample set table. I thought that the way to do this was to have the sample_set_ids in the entity:sample_set_id column and then add other columns I ...

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• July 30, 2020 15:02
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1. Community
2. General Discussion
3. error updating sample set table

Hi!  The workspace name is all_germline_control_cohorts. There is no submission/ workflow ID because I am just uploading a sample set table. This is a screenshot of what it looks like.    Best, Sab...

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• July 29, 2020 15:57
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