Featured Workspace Help
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Get help with featured workspaces - what to do before you post! Pinned
- Tiffany Miller
- Edited
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how to run latest GATK Best Practices workflows Pinned Answered
- Ashish Agarwal
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Confusion on how to set up read group-level processing in workspaces
- Chris Whelan
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Error running SpaceRanger Workflow from lilab-bcb/cumulus
- Rômulo Galvani
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Best strategy to reverse the GVCF reblocking step on Terra
- Matilde
- Edited
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Somatic CNV workflow
- Indrani Datta
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Terra GCP Somatic CNV workflow
- Indrani Datta
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Somatic copy number variants (CNVs) and Panel of Normals creation
- Indrani Datta
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Whole-Genome-Analysis-Pipeline failing in ImportGVCFs step
- Aloysius Domingo
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Using a VCF from an alternate germline caller for joint calline
- James Jennings
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Non-human reference genome for GATK SV Pipeline
- Anamica Bedi de Silva
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GATK SV required inputs
- Edward C
- Edited
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processing-for-variant-discovery-gatk4 workflow: fails repeatedly at SamToFastqAndBwaMem step
- Arun Seetharam
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Running `GATK Best Practices Germline SNPs and INDELS` on custom genome
- Arun Seetharam
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file not found
- Juerg Straubhaar
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GenotypeGVCFs using output from WholeGenomeGermlineSingleSample_v3.0.0
- Don Conrad
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Paired-Fastq-to-Unmapped-Bam can't open my fastq.gz files
- Alex Sticco
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Workflow Cost Estimator - getting 404s from API
- Chris Miller
- Edited
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Running ExomeGermlineSingleSample across multiple samples Fails at CheckContamination
- Don Conrad
- Edited
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Mitochondria-SNPs-Indels-hg38 copy
- Halima Alachram
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Terra-Notebooks-Quickstart Problem
- Robin Karge
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ExomeGermlineSingleSample fails
- Mat Nightingale
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CNN configs need outputs
- Laura Gauthier
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GATK4-RNA-Germline-VariantCalling sample file failing
- Maayan Baron
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Large WGS cohort genotyping with 'GATK Best Practices Germline SNPs and INDELS' Answered
- dsilencio
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gatk4-exome-analysis-pipeline BamProcessing.SortSam fails with Error Code 10 Answered
- Roger Dettloff
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Make public viewing without Terra account Completed
- Sehyun Oh
- Edited
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