Using a VCF from an alternate germline caller for joint calline

Post author
James Jennings

Samantha (she/her)


Do you have an alternative workflow for doing joint calling using GATK when the VCF is generated from a different caller (eg. Platypus)? If so, please send us any details on how to format the VCF into GVCF and how to proceed with family trio joint calling.




1 comment

Please sign in to leave a comment.