Using a VCF from an alternate germline caller for joint calline

Post author
James Jennings

Samantha-she-her

 

Do you have an alternative workflow for doing joint calling using GATK when the VCF is generated from a different caller (eg. Platypus)? If so, please send us any details on how to format the VCF into GVCF and how to proceed with family trio joint calling.

 

 

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