I grabbed the Workflow Cost Estimator (from the BioData Catalyst collection) and copied it into my workspace (under leylab_terra1/ch_fusion_topmed). When I try to run it, using a default cloud profile, I'm getting multiple errors. The first is from the pip installation, which says
Successfully built terra-notebook-utils bgzip cli-builder . . .
But also dumps a bunch of (possibly ignorable?) errors:
ERROR: pip's dependency resolver does not currently take into account all
the packages that are installed. This behaviour is the source of the
following dependency conflicts.
tensorflow-io 0.18.0 requires tensorflow-io-gcs-filesystem==0.18.0, which is
explainable-ai-sdk 1.3.2 requires xai-image-widget, which is not installed.
tfx-bsl 1.3.0 requires absl-py<0.13,>=0.9, but you have absl-py 0.15.0 which
. . .
If I ignore those and try to continue, when I run this block:
for s in list_submissions_chronological():
print(s['submissionId'], s['submissionDate'], s['status'])
I get a lengthy error that culminates in this 404:
HTTPError: 404 Client Error: Not Found for url: https://api.firecloud.org/api/workspaces/terra-61b00e16/ch_fusion_topmed/submissions
The same thing occurs if I try to manually drop a submission ID from my job list into the subsequent block:
HTTPError: 404 Client Error: Not Found for url: https://api.firecloud.org/api/workspaces/terra-61b00e16/ch_fusion_topmed/submissions/542ee6a6-444d-4d09-825f-bdc8c8f9667b
Is the API down? Am I doing something wrong? Any advice you can give would be appreciated!