General Discussion

Can't copy python notebook to another workspace
- Charles Markello
- October 16, 2020 22:15
- 0 votes
- 2 comments
Terra API workaround?
- Laura Gauthier
- October 16, 2020 13:05
- 0 votes
- 2 comments
Determining GCP instance type for workflows.
- Brian Hannafious
- October 07, 2020 17:48
- 0 votes
- 4 comments
hg19 and hg38 TCGA workspaces
- Sabrina Camp
- October 07, 2020 15:04
- 0 votes
- 17 comments
TCGA data path error
- palash pandey
- October 06, 2020 18:08
- 0 votes
- 3 comments
Mutatation Signature Analyzer
- palash pandey
- October 06, 2020 15:35
- 0 votes
- 6 comments
RStudio Password
- Nicholas Lim
- October 03, 2020 13:59
- 0 votes
- 2 comments
Cromwell execution directory
- Stephen Fleming
- October 02, 2020 21:14
- 1 vote
- 4 comments
importing tasks using relative paths in Terra
- Wendy Wong
- October 02, 2020 18:27
- 0 votes
- 6 comments
TCGA RNA-Seq counts workflow -- fails for all or most samples
- Rebecca Eliscu
- September 25, 2020 00:52
- 0 votes
- 9 comments
Workflow failure: "Workflow is making no progress but has the following unstarted job keys"
- Arvind Ravi
- September 24, 2020 19:24
- 0 votes
- 7 comments
GATK3.8 GenotypeGVCFs MQ abnormal
- Qiuju Xia
- September 21, 2020 03:52
- 0 votes
- 1 comment
How can I get TCGA data into the notebooks for analysis?
- Rebecca Eliscu
- September 16, 2020 18:28
- 0 votes
- 7 comments
Bug report: sharing new workflow versions
- Laura Gauthier
- September 10, 2020 19:25
- 0 votes
- 3 comments
cromwell file permission declined
- Sevgi Umur Reagh
- September 08, 2020 13:41
- 0 votes
- 4 comments
custom runtime configuration
- AIBS MolGen
- September 04, 2020 18:13
- 0 votes
- 5 comments
Cannot delete Terra workspace due to apparent MySQL error
- Ash O'Farrell
- August 31, 2020 21:27
- 0 votes
- 11 comments
Is there a way to find which workspace owns a bucket?
- pmontgom
- August 13, 2020 15:20
- 0 votes
- 2 comments
Job Manager is running but encountered a problem getting data from its workflow server
- Chad Smith
- August 10, 2020 15:56
- 0 votes
- 1 comment
Adding billing account returns project_id contains prohibited words
- Chad Smith
- August 10, 2020 15:34
- 0 votes
- 1 comment
terra does not load from an incognito brower
- Haley Abel
- August 10, 2020 14:33
- 0 votes
- 3 comments
Using Data from Google Bucket in R Jupyter Notebook or changing work directory
- Dan Spagnolo
- July 30, 2020 19:49
- 0 votes
- 13 comments
error updating sample set table
- Sabrina Camp
- July 29, 2020 15:03
- 0 votes
- 6 comments
cnv-somatic workflow not compatible with gatk latest versions (4.1.7.0 above)
- Samuel Terkper Ahuno
- July 28, 2020 11:08
- 0 votes
- 7 comments
Job seems stuck indefinitely at the delete intermediate files step and does not complete
- Giulio Genovese
- July 24, 2020 16:40
- 0 votes
- 8 comments
one shard keeps failing to load a BAM file
- Edyta Malolepsza
- July 21, 2020 22:35
- 0 votes
- 8 comments
Call input and runtime attributes evaluation failed for ...
- Giulio Genovese
- Edited July 21, 2020 00:26
- 0 votes
- 3 comments
PreparingJob state consumes most of a task running time, how to avoid?
- Giulio Genovese
- July 16, 2020 16:02
- 0 votes
- 8 comments
Terra fails to delocalize files listed through read_lines()
- Giulio Genovese
- Edited July 14, 2020 21:45
- 0 votes
- 4 comments
write_lines()/write_map()/write_tsv()/write_json() fail when run in a workflow rather than in a task
- Giulio Genovese
- Edited July 13, 2020 19:03
- 0 votes
- 4 comments

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