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TCGA data path error

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3 comments

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    Samantha Velasquez

    Hi palash pandey,

     

    Thanks for writing in. Can you share the workspace where you are seeing this issue with GROUP_FireCloud-Support@firecloud.org by clicking the Share button in your workspace? The Share option is in the three-dots menu at the top-right.

    1. Add GROUP_FireCloud-Support@firecloud.org to the User email field and press enter on your keyboard.
    2. Click Save.

     

    Let us know the workspace name, as well as the relevant submission and workflow IDs. We’ll be happy to take a closer look as soon as we can.

     

    Best,

    Samantha

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    palash pandey

    Hey Samantha!

    Thanks so much for the quick response. I have shared the workspace with you, it is called "palash-gcp/TCGA_READ_hg38_ControlledAccess_GDCDR-12-0_DATA copy", one of the workflows that failed is called SigprofilerSBS and has the id  714febf9-7ca5-466d-8be5-f3cc0df36880.

    Please let me know if I can provide any more details.

    -Palash

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    Samantha Velasquez

    Hi palash pandey,

     

    The hg38 workspaces require users to run a workflow in order to retrieve the data before you can to run any analyses on the referenced data files. The workflows for this purpose can be found in the 'Workflows' tab of the workspace. Once you have retrieved the data and copied it into your own workspace's bucket, you will able to run your own workflows on the data.

     

    Best,

    Samantha

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