1. Community
2. General Discussion
3. TCGA RNA-Seq counts workflow -- fails for all or most samples

Hi Rebecca, For submission 30b3fe23-508b-41bd-8383-9be7af51870b I'm seeing similar types of error messages in Job Manager. https://app.terra.bio/#workspaces/thisnameistotallyunique/TCGA_LGG_hg38_Op...

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• Jason Cerrato
• September 29, 2020 15:47
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1. Community
2. General Discussion
3. TCGA RNA-Seq counts workflow -- fails for all or most samples

Hi Rebecca, Since this workflow you're using isn't a Terra-maintained workflow, you may need to reach out to its authors if you determine anything about it is not functioning correctly. I'm happy t...

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• Jason Cerrato
• September 29, 2020 15:35
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1. Community
2. General Discussion
3. TCGA RNA-Seq counts workflow -- fails for all or most samples

Hi Rebecca, Thanks for that! I'll take a look and get back to you as soon as I can. Kind regards, Jason

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• Jason Cerrato
• September 29, 2020 15:22
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1. Release notes and service notifications
2. Service Notifications
3. Service Incident - October 15, 2019

Hi Kathleen Morrill, This article refers to a Dockerhub outage that affected some workflows on Terra on October 15-16, 2019. This issue is now resolved. If you are experiencing any issues with Dock...

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• Jason Cerrato
• September 29, 2020 12:44
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1. Community
2. General Discussion
3. TCGA RNA-Seq counts workflow -- fails for all or most samples

Hi Rebecca, Can you confirm GROUP_FireCloud-Support@firecloud.org is in the list of users the workspace is shared with? I am unable to find the workspace in a search. If you are seeing the address ...

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• Jason Cerrato
• September 28, 2020 17:02
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1. Community
2. General Discussion
3. Workflow failure: "Workflow is making no progress but has the following unstarted job keys"

Hi Arvind, Thank you for your patience. We've confirmed that this error was due to a recently-discovered bug which was patched on Friday. We've also confirmed that all of the submission's jobs are ...

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• Jason Cerrato
• September 28, 2020 13:35
• 0 votes

1. Community
2. General Discussion
3. TCGA RNA-Seq counts workflow -- fails for all or most samples

Hi Rebecca Eliscu, Thanks for writing in—we're happy to take a closer look here! Can you share the workspace where you are seeing this issue with GROUP_FireCloud-Support@firecloud.org by clicking t...

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• Jason Cerrato
• September 25, 2020 14:14
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1. Community
2. General Discussion
3. Workflow failure: "Workflow is making no progress but has the following unstarted job keys"

Hi Arvind Ravi, Thanks for writing in. We'll be happy to take a closer look at this! Can you share the workspace where you are seeing this issue with GROUP_FireCloud-Support@firecloud.org by clicki...

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• Jason Cerrato
• September 25, 2020 14:07
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1. Community
2. Feature & Documentation Requests
3. Importing TSVs that contain arrays

Hi all, Thank you for your feature request. I've logged these requests in our database for the Product team to review. I'll also be bringing this up with the appropriate manager at our next meeting...

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• Jason Cerrato
• September 23, 2020 19:02
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