Andrew Davidson
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Recent activity by Andrew Davidson
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TCGA workspace data sample data dictionary is missing
I am working with the 33 TCGA controlled access workspaces. The 'sample' data model has 39 features (i.e. columns). I need to quantify the original RNA reads, including the unmapped reads using a n...
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example of how to set java max heap size dynamically
If your command runs a java program, increase the runtime memory will probably fix 'out of memory' error. The example shows how to dynamically calculate the max heap size on linux based docker imag...
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- 1 vote
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Why are broad institute billing accounts associated with my GCP billing account?
Hi I recently burned through all my $300 free GCD dollars and am in the process of setting up a new project. My only project is ‘test-aedavids-proj’. When I logged into GCP billing see several othe...
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how to re-run workflows when some samples fail?
I have a fairly simple workflow with 2 tasks. The second task depends on the output produced by the first. If I look at the output tab on the workspace workflow tab I see the output is configured c...
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how clean up a test workspace?
I cloned a workspace for testing purposes. I submitted a bunch of workflows over and over again on the same data set to test performance I would like to get rid of all the "leaked" storage associa...
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what does status running mean?
I running some performance tests today to explicitly understand what happens when I exceed my CPU quota. I was surprised to see the job history page shows the status of all data entries as running?...
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