Jason Cerrato

1. Community
2. Known Issues
3. Workflow input JSON array with length of one is converted to scalar

Hi Gabriel Goodney, We have a known good workaround for cases where you know the list/array only has one element. The workaround is to surround the reference with square brackets so that Cromwell k...

• View comment
• September 01, 2021 20:47
• 0 votes

1. Community
2. General Discussion
3. Is it possible to have a task directly modify an input file?

Hi Aisling, Hmm do you know at what point in the script it's failing with this message? Do you get the same result if you run a command to change the localized files to be owned by topmed prior to ...

• View comment
• September 01, 2021 15:28
• 0 votes

1. Community
2. General Discussion
3. Fixing Cache Miss: 10 failed copy attempts

Hey Megan, Just wanted to check in here and see if that ended up working for you. Let me know! Kind regards, Jason

• View comment
• August 31, 2021 15:26
• 0 votes

1. Community
2. Known Issues
3. Workflow input JSON array with length of one is converted to scalar

Hi Gabe, Thanks for writing in. This has not yet been resolved but I am happy to check with the team to see if there is a known good workaround. I'll get back to you as soon as I can. Kind regards,...

• View comment
• August 31, 2021 13:37
• 0 votes

1. Community
2. General Discussion
3. Fixing Cache Miss: 10 failed copy attempts

Hi Megan, Thanks for writing in and for detailing your issue. I could definitely see that being a good solution for getting around the cache miss situation, making your task more unique so you can ...

• View comment
• August 27, 2021 14:29
• 0 votes

1. Community
2. General Discussion
3. Add Array[File] to Workspace Data table

Hi Justin, Great to hear! I'll do a little digging to see why mine led to a different result—perhaps it has something to do with the way I've echo'd the lines into a file—but I'm glad to hear setti...

• View comment
• August 24, 2021 12:55
• 0 votes

1. Community
2. General Discussion
3. Add Array[File] to Workspace Data table

Hey Justin, I wanted to touch base here since I said I would try to get you an answer or workaround by today. I've confirmed that simply listing out your paths separated by commas does seem to reso...

• View comment
• August 23, 2021 21:03
• 0 votes

1. Community
2. General Discussion
3. Add Array[File] to Workspace Data table

Hi Justin, Thanks for letting me know. I'll try to get you an answer or workaround before end of day. Kind regards, Jason

• View comment
• August 23, 2021 15:58
• 0 votes

1. Community
2. General Discussion
3. Add Array[File] to Workspace Data table

Hi Justin, Ah, I see! Thanks for clarifying. Let me look into this to see if it's possible and get back to you. Kind regards, Jason

• View comment
• August 20, 2021 15:17
• 0 votes

1. Community
2. Known Issues
3. basename() does not function as expected on DRS URIs

Hey Aisling, We were able to validate this behavior and we've filed a bug report. I'll be happy to reach out once I get word that the bug is fixed. Thanks so much for bringing this up and for posti...

• View comment
• August 20, 2021 13:47
• 0 votes