Sabrina Camp
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Recent activity by Sabrina Camp
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Here is the environment configuration
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Hi Josh, The kernel for my R Terra notebooks have not been able to start Friday or Today. Is this a known issue or is there a workaround? Terra account email: scamp@broadinstitute.org Google Pro...
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Update: I was able to change the environment by entering a new path to a base image in the Custom Environment container image section. However, my issue of the kernel not starting still remains. He...
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Upon further investigation, this issue seems to be directly related to the size of the notebook. The notebook that was failing to autosave was 135 Mb. When I deleted half of the cells in the notebo...
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When I keep trying to click the save button, the screen goes to this and when I reload my work is lost up to the last successful checkpoint.
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Hi Samantha, I'm using an older base image intentionally. If I always use the most recent image, the packages installed would be newer/different versions which hurts the reproducibility in my resea...
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scamp@broadinstitute.org terra-10407992 saturn-30f54dde-6911-4c80-8c62-c94008e53c75 Issue started around 10 AM
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Update: The next time I started the cloud environment (today, after increasing the disk 3 days ago), the additional disk was present on /home/jupyter/notebooks. I'm not sure why there was a delay, ...
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Hi, One of the workspaces is "vanallen-firecloud-nih/VanAllen_Master_Prostate_copy_germline_analysis". An example submission ID is 5226e3cf-fc15-4228-9f80-40c929db4512 with a few of the failed work...
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Also on another note, I am trying to use bam files from the hg38 cohort and see this note on the dashboard of the workspace "hg38 TCGA and TARGET workspaces reference files by their GDC UUIDs. In o...
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