User

Liudmila Elagina

Member since
Total activity 105
Last activity
Following 0 users
Followed by 0 users
Votes 2
Subscriptions 23

Posts

Recent activity by Liudmila Elagina

  • Strange error message when trying to re-launch failures

    Hello Terra team,   I got this error message when trying to relaunch failed workflows for the getzlab/CGA_WES_Characterization_Pipeline_v0.1_Dec2018/2 pipeline:   Error rerunning failed workflowsEr...

    • 3 followers
    • 3 comments
    • 0 votes

  • Incorrect parsing of wdl

    Hello Terra Team,   I noticed strange behavior in the method configuration. It suddenly got populated with a large number of default parameters (see screenshot):   However, those are not optional ...

    • 3 followers
    • 16 comments
    • 0 votes

  • Restarting failed workflows while other worflows are still running in that job submission

    Hello, I started running the method on pair set and some pairs failed right away as I didn't have access to the BAMs. I got access to the BAMs and now would like to restart those failed workflows. ...

    • 1 follower
    • 0 comments
    • 0 votes

  • Peculiar feature when importing method configurations from another workspace

    Hello, I encountered very peculiar behavior when importing method configurations through Terra using the "Copy to another workspace" button: The namespace of the method changes to the namespace of...

    • 2 followers
    • 3 comments
    • 0 votes

  • Error invalid input while launching workflow

    Hello, I get this error when trying to resubmit failed workflows from the JOB HISTORY tab: Is it because Tool name contains a dot in its name? If so, why it doesn't complain about dot when I submit...

    • Edited
    • 3 followers
    • 13 comments
    • 0 votes

  • Saving one workspace attribute takes more than half a minute?

    After pushing button save for a workspace attribute it took about 35 seconds for it to be saved (replicated several times). Without the option of loading workspace attributes from file this very ti...

    • 2 followers
    • 2 comments
    • 0 votes

  • Workflow error message when required annotations are missing

    When workflow is missing annotations in Data Model Firecloud would output message like that: where is in Terra it is not so clear why workflow failed as it doesn't output anything: and after clic...

    • 2 followers
    • 6 comments
    • 0 votes

  • Uploading Method Configuration from JSON file throws an error

    Uploading method configuration from json file in Terra throughs an error: Configuration json file was downloaded first from Firecloud and then from Terra. In both cases, I get the same error. Ther...

    • Edited
    • 2 followers
    • 3 comments
    • 0 votes

  • Uploading Pair Metadata doesn't create links to case and control samples

    Uploading metadata for a pair annotations through Terra doesn't create links for case and control samples in the workspace. Any pair level workflow complains that case and control samples are not f...

    • 3 followers
    • 10 comments
    • 0 votes

  • Import workspace attributes from the file

    Previously, it was possible to import workspace attributes from the tsv file. As far as I can see Terra only allows to enter workspace attributes one variable at the time. Is this something still i...

    • 2 followers
    • 3 comments
    • 1 vote
    • Completed