Error invalid input while launching workflow
Hello,
I get this error when trying to resubmit failed workflows from the JOB HISTORY tab:
Is it because Tool name contains a dot in its name? If so, why it doesn't complain about dot when I submit job through the regular submission process in the TOOLS tab?
Thank you for your help,
Luda
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13 comments
I got the same error when trying to launch an analysis for the same workflow getzlab/CGA_WES_Characterization_Pipeline_v0.2_Apr2019:
Are dots now prohibited from Tools names?
Hello Luda,
To clarify, you were able to successfully submit the job through Tools but it is erroring when you try to re-submit a failed workflow from the Job History?
Hello Sushma,
I was able to submit a job through Tools yesterday for the same workflow. However today I encountered this error in both Tools and Job History.
Thank you,
Luda
Hi Luda,
Apologies for the delay in reply - the team was out of the office yesterday for a team event :) I will make sure to take a look at this today. Would you be able to share your workspace with us so that we can take a closer look to test if this is a bug or some other specific issue? You can share the workspace with:
GROUP_FireCloud-Support@firecloud.org
Hello Sushma,
No problem at all. I just shared the workspace called NeoVax_Clinical_Trial_Mock_Up_v2.
The pipeline that I can not launch through Terra (but have no problem launching from Firecloud) is CGA_WES_Characterization_Pipeline_v0.2_Apr2019
Thank you,
Luda
Hi Luda,
Apologies but I see that the Tool appears to be redacted - this happens if the actual Tool is not public in the repository. Can you share the specific Tool, CGA_WES_Characterization_Pipeline_v0.2_Apr2019, with the FireCloud group above as well?
Sushma
Sure, I just shared the workflow
Hi Luda-
So sorry for the back and forth, I realize it has been slow! I unfortunately cannot see the Tool still even though you have shared with me. Can we try one last final step if you don't mind. Can you make your Tool public in the repository (if possible).
Hello Sushma,
I just shared with you another workspace called broad-firecloud-wuclonal/NeoVax_Clinical_Trial_Mock_Up, where I have a similar problem with the workflow. The workflow called CGA_WES_Characterization_Pipeline_v0.1_Dec2018. it is public in method repository so you should have access to it. Let me know if you have any problems viewing that one too.
Thank you,
Luda
Hi Luda,
I see now why I am unable to work with the Tool! It looks as though you were able to export Snapshot 1 to you workspace but that snapshot is no longer available in the Methods Repository so I am unable to access it.
Can you test by exporting Snapshot 2 of CGA_WES_Characterization_Pipeline_v0.1_Dec2018 to your workspace (or I can do it to test if you do not mind me working in your workspace broad-firecloud-wuclonal/NeoVax_Clinical_Trial_Mock_Up)!
Can you try this method: neovax/CGA_WES_Characterization_Pipeline_v0.1_Dec2018?
I just gave you permissions for it
I still see the neovax/CGA_WES_Characterization_Pipeline_v0.1_Dec2018 method as "Redacted" but I *can* see the
Hi Luda,
We identified and fixed a bug that caused the "relaunch failures" feature to fail unexpectedly when the workflow's method name contained the period character. Regular (initial) submissions were not affected.
The fix should be in production next week, most likely Monday 12/16.
Best,
Adam
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