User

Chet Birger

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Total activity 51
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Posts

Recent activity by Chet Birger

  • Unable to export workflow to workspace

    I am unable to export a workflow to a workspace.  I receive the error: Error: Substream Source(EntitySource) cannot be materialized more than once I tried with both an existing workspace and a new ...

    • 2 followers
    • 10 comments
    • 0 votes
    • Completed

  • automated email notification of shared workspace has "None None" as subject

    We have portal that uses a service account to generate Terra workspaces.  It then shares the workspace with a user (identified by the google address with which the user registered with the portal)....

    • 2 followers
    • 1 comment
    • 0 votes

  • Group read access to google bucket not functioning

    I am the owner of a bucket, getzlab-workflows-reference_files-getzlab_ca.  I have granted the group Getz_Lab@firecloud.org Storage Object Viewer privileges for that bucket, but several members of t...

    • 2 followers
    • 2 comments
    • 0 votes

  • intermittent task failing during localization of BAMs

    This may be related to the earlier bug where tasks were hanging during localization of BAMs.  In my case tasks are not hanging, but rather reporting a failure.  While intermittent, when scattering ...

    • 2 followers
    • 16 comments
    • 0 votes

  • unable to view status of running job

    I am unable to retrieve job status of a recently submitted workflow.   When I attempt to view the workflow's status, I receive the following message: Job Manager is running but encountered a proble...

    • 3 followers
    • 13 comments
    • 0 votes

  • submission queued for an hour.

    Is there a current issue with Terra?  A submission I made has been in the queued state for an hour. Thanks,  Chet

    • 6 followers
    • 34 comments
    • 0 votes

  • Cannot run workflows...error messagerawls unable to query method repo

    I am unable to run my workflows.  When I open up a method configuration (which links to a workflow in the FireCloud method repo), I receive the following error notification:

    • 2 followers
    • 3 comments
    • 0 votes

  • Job Manager page fails to load

    When attempting to load the job managers page (in order to debug a workflow failure), I received the following message: Job Manager is running but encountered a problem getting data from its workfl...

    • 2 followers
    • 7 comments
    • 0 votes

  • unable to share a workspace I own in Terra, but can share it from FireCloud

    I am owner of the workspace broad-firecloud-ccle/CCLE_raw_data I recently got a request to grant read access to the workspace to two new members of the CCLE team.  I found I was unable to do that...

    • 2 followers
    • 1 comment
    • 0 votes

  • workspace-column-defaults workspace attribute no longer working

    In FireCloud, you could define a workspace attribute workspace-column-defaults.  The json value for that attribute would specify the default displays for the various entity tables.  This does not a...

    • 2 followers
    • 1 comment
    • 0 votes