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Workflow aborting for 6 days

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10 comments

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    Jason Cerrato

    Hi Laura,

    Likewise on this, I'll have a look and get back to you as soon as I'm able.

    Kind regards,

    Jason

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    Jason Cerrato

    Hi Laura,

    Are you seeing this as Aborting on your end?

    https://app.terra.bio/#workspaces/broad-firecloud-dsde-methods/gCNV-CMG-test/job_history/c8c89d05-fc8f-4b49-8abb-cf758e4a4098

    Kind regards,

    Jason

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    Laura Gauthier

    Ooh, that's weird.  I see what you have for this workflow details page, but it says "aborting" in the list view.  And then Job Manager can't load any more info.  Should I try to abort from the API?

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    Jason Cerrato

    Hi Laura,

    Let me double-check with the Batch team on their recommendation and get back to you.

    Kind regards,

    Jason

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    Laura Gauthier

    I'm also having trouble loading the metadata for 8b221330-8cac-46b8-864f-999ad7ae1ddf -- possibly the same issue?

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    Jason Cerrato

    Hi Laura,

    We'll take a look and get back to you!

    Kind regards,

    Jason

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    Jason Cerrato

    Hi Laura,

    Are you having trouble pulling the metadata in general, or only in viewing the metadata using Job Manager? I see that Job Manager doesn't load the details for this job, but I was able to pull metadata information for it. It's a very large file, about 134 MB. 

    Kind regards,

    Jason

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    Jason Cerrato

    Hi Laura,

    Do you still require any assistance looking into this latest submission? As mentioned, I see that Job Manager doesn't load the details for this job, but I was able to pull metadata information for it. It's a very large file, about 134 MB. 

    Kind regards,
    Jason

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    Laura Gauthier

    Hi Jason,

    I ended up crawling the output directory to find the error I was looking for without the metadata.  I just tried to get the metadata from the API and the Swagger page hung.  So, no I couldn't view the metadata, but I don't need it anymore.

     

    Thanks,

    Laura

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    Jason Cerrato

    Hi Laura,

    Got it. If you run into anything similar again let us know and we're happy to take a closer look with the engineers.

    Kind regards,

    Jason

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