Workflow aborting for 6 days
Submission c8c89d05-fc8f-4b49-8abb-cf758e4a4098 in workspace broad-firecloud-dsde-methods/gCNV-CMG-test has been "aborting" for six days. Will this affect anything else in my workspace, e.g. having a write lock on data model attributes or holding on to quota? I'm having trouble with other workflows (well, the retry of the same workflow) and I want to make sure this stuck workflow isn't preventing other jobs from succeeding.
Comments
10 comments
Hi Laura,
Likewise on this, I'll have a look and get back to you as soon as I'm able.
Kind regards,
Jason
Hi Laura,
Are you seeing this as Aborting on your end?
https://app.terra.bio/#workspaces/broad-firecloud-dsde-methods/gCNV-CMG-test/job_history/c8c89d05-fc8f-4b49-8abb-cf758e4a4098
Kind regards,
Jason
Ooh, that's weird. I see what you have for this workflow details page, but it says "aborting" in the list view. And then Job Manager can't load any more info. Should I try to abort from the API?
Hi Laura,
Let me double-check with the Batch team on their recommendation and get back to you.
Kind regards,
Jason
I'm also having trouble loading the metadata for 8b221330-8cac-46b8-864f-999ad7ae1ddf -- possibly the same issue?
Hi Laura,
We'll take a look and get back to you!
Kind regards,
Jason
Hi Laura,
Are you having trouble pulling the metadata in general, or only in viewing the metadata using Job Manager? I see that Job Manager doesn't load the details for this job, but I was able to pull metadata information for it. It's a very large file, about 134 MB.
Kind regards,
Jason
Hi Laura,
Do you still require any assistance looking into this latest submission? As mentioned, I see that Job Manager doesn't load the details for this job, but I was able to pull metadata information for it. It's a very large file, about 134 MB.
Kind regards,
Jason
Hi Jason,
I ended up crawling the output directory to find the error I was looking for without the metadata. I just tried to get the metadata from the API and the Swagger page hung. So, no I couldn't view the metadata, but I don't need it anymore.
Thanks,
Laura
Hi Laura,
Got it. If you run into anything similar again let us know and we're happy to take a closer look with the engineers.
Kind regards,
Jason
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