Terra is a cloud-native platform for biomedical researchers to access data, run analysis tools, and collaborate.
Terra powers important scientific projects like FireCloud, AnVIL, and BioData Catalyst. Learn more.
Laura Gauthier commented, October 26, 2020 19:03
I ended up crawling the output directory to find the error I was looking for without the metadata. I just tried to get the metadata from the API and the Swagger page hung. So, no I coul...
Laura Gauthier created a post, October 22, 2020 22:32
What is "Will not start job CollectCoverageGCNV.CollectCounts:1:1 when workflow state is 'WorkflowExecutionFailingState' and when 'restarting'=false" ? I've never seen this one before. It sounds ...
Laura Gauthier commented, October 21, 2020 16:05
I'm also having trouble loading the metadata for 8b221330-8cac-46b8-864f-999ad7ae1ddf -- possibly the same issue?
Laura Gauthier commented, October 20, 2020 14:16
Yes, everything looks great! Data model has data in it and I was able to access it. Thanks for all your help.
Is there anything I need to know for the future about this "carboniting" process or w...
Laura Gauthier commented, October 19, 2020 17:23
Ooh, that's weird. I see what you have for this workflow details page, but it says "aborting" in the list view. And then Job Manager can't load any more info. Should I try to abort from the API?
Laura Gauthier created a post, October 19, 2020 13:52
Submission c8c89d05-fc8f-4b49-8abb-cf758e4a4098 in workspace broad-firecloud-dsde-methods/gCNV-CMG-test has been "aborting" for six days. Will this affect anything else in my workspace, e.g. havin...
Laura Gauthier created a post, October 19, 2020 13:50
I have a workflow that finished a couple days ago based on the existence of outputs in the execution directory, but it still hasn't added those outputs to the data model. This is submission 419778...
Laura Gauthier commented, October 16, 2020 15:44
I've shared the workspace.
The workflow I can't view in Job Manager is 3fb30759-583c-493f-88fb-4273b487a4a4. After crawling the outputs folders, it looked like two tasks failed for no reason, so I...
Laura Gauthier created a post, October 16, 2020 13:05
I have a workflow I'm running on a set of ~1500 samples. The workflow failed, but Job Manager won't give me any information. I get a 500 error. From the Swagger API page, the metadata is too big...
Laura Gauthier commented, September 15, 2020 19:22
My collaborator informs me that everything seems to be working now. Maybe it just took a little while to update? I'm willing to call this resolved unless we see it again.