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Referring to folders in WDL

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    Jason Cerrato

    Hi Alex,

    If you don't need to specify a directory and the tool can operate on the contents of the current working directory, you should be able to just localize the files then run the command, and the command will run on the files in the root directory. If you need to specify one, or you want to organize the files into a separate directory, you can simply run a mkdir command to create a directory and move the files into it, then run the tool on that directory.

    Does this make sense?

    Kind regards,

    Jason

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