Alex O
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Alex O commented,
Awesome, thank you so much!
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Alex O commented,
Added, but versions 3 and 5 were edits I made to try to get it to work. The one that gave me the error originally was v2. Thanks!
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Alex O commented,
Shared
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Alex O created a post,
Outputting and inputting a directory
I'm writing a wdl that uses both salmon index and salmon quant. It runs fine locally using:task index {...output { File salmonindex }...}=>input { File index.salmonindex}But running on ter...
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Alex O commented,
Sorry for one last thing: any idea why variables wouldn't populate with their values? The script is using the strings "${input_value}" instead of the actual values of the variables for every variab...
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Alex O commented,
Beri, The first issue was fixed, and I appreciate the links to the documentation. The reason I'm confused with this specific case is that I am using that documentation and importing a file in the s...
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Alex O commented,
If you want to take a look, I posted the most recent version of the files on the repo I shared last week
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Alex O commented,
Furthermore, the else is being triggered despite having runtime memory defined. The only way was able to get it to start was by taking out the conditional, which I would have preferred stay in
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Alex O commented,
I had only given it the Creator role, not the Viewer role. Adding both fixed it right up, thanks!
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Alex O commented,
For the first, I had originally put the quotes on to prevent Unrecognized token on line 60, column 60: runtime_memory=if defined(runtime_memory) then $runtime_memory else 8 + ceil(size(input_bam, '...
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