The WDL tutorial 1 does not work

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Alex O

• May 13, 2020 20:06
• Edited

The current wdl tutorial files and instructions are not current with the programs or filenames that are being used, causing the tutorial to no longer function as published. For more information as to the new formatting, there is a comment on the tutorial's page: https://support.terra.bio/hc/en-us/articles/360037127992--1-howto-Write-your-first-WDL-script-running-GATK-HaplotypeCaller

 

Edit: On further practice, every one of those tutorials are out of date with the GATK commands

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  Jason Cerrato

  • May 13, 2020 20:26

  Hi Alex,

  Thank you for writing in about this. The User Education team is currently in the midst of revitalizing these articles, but I do see much confusion trying to use these as they are since there is no indication of this work being done, nor are there alternate resources provided. I will flag this up with the team to make them aware.

  Kind regards,

  Jason

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