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Managing data with tables

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    Pazpolak

    Is their an explanation on how to setup workspace for cancer genomics analysis when the BAM.BAI files already uploaded to google bucket?  Is the order of tables still important ?

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    Jason Cerrato

    Hi Pazpolak,

    You would set up the workspace in much the same way, adding a column to the .tsv for the BAM.BAI with the associated paths. For an example, download the .tsv from this Featured Workspace here: https://app.terra.bio/#workspaces/help-gatk/Somatic-CNVs-GATK4/data

    The order of table upload is still important if you would like them linked/nested. I recommend reviewing the contents of this article Understanding Entity Types for more details.

    If you have any further questions, please let us know.

    Kind regards,

    Jason

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