Andrew Davidson
Comments
Recent activity by Andrew Davidson
-
Hi Anikas I read the description of 'what is left behind' in https://app.terra.bio/#workspaces/help-terra/Terra-Tools. (this is the Jupyter Notebook : Remove_Workflow_Intermediates). seems like a ...
- View comment
- Edited
- 1 vote
-
https://support.terra.bio/api/repository/v1/datasets/%7Bid%7D/updateSchema does not exist
- View comment
- 0 votes
-
to upload the workspace tsv file. You must go to the workspace data tab. Under 'other data' click on 'workspace data', the use the upload tsv. You can not upload using the plus sign next to "TABLE +"
- View comment
- Edited
- 0 votes
-
Hi Pamela I really appreciate your tenacity. I realize Terra is beta. There are going to be some edge cases. The directions you provided are for transferring files between a terra workspace bucket ...
- View comment
- Edited
- 0 votes
-
Hi Pamela My understanding is our wdl task commands run in/on a docker container. We only have access to the commands and programs installed on the container. To use gsutil it would need to be inst...
- View comment
- 0 votes
-
Hi Allie It is not clear how I would use this example? I took a look at https://github.com/gatk-workflows/gatk4-data-processing/blob/master/processing-for-variant-discovery-gatk4.wdl . It is not c...
- View comment
- Edited
- 0 votes
-
I really appreciate the release notes and updates. "To learn about what's changed, release notes are made available" I am not authorized to see the release notes at https://support.terra.bio/hc...
- View comment
- 0 votes
-
Looks like you can not edit your original post. The 'sample' data model has 39 features (i.e. columns). The column names do not seem to line up with anything in the TCGA code tables. here is an ...
- View comment
- 0 votes
-
Documentation is incomplete. Please add the link Peter mentioned
- View comment
- 0 votes
-
Hi Danny Here is a really good tutorial https://combine-lab.github.io/salmon/getting_started/ Kind regards Andy
- View comment
- 0 votes