Giulio Genovese

Member since July 13, 2020 17:00

Total activity 44

Last activity January 19, 2024 21:42

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Posts

Recent activity by Giulio Genovese

Job Manager fails to provide more than one error message from the metadata

Some of the users of my workflows are having a hard time debugging a workflow when providing incorrect inputs. I have managed to create a minimal workflow that exposes the problem: version 1.0workf...
- Edited July 13, 2022 01:16
- 5 followers
- 8 comments
- 3 votes
Job seems stuck indefinitely at the delete intermediate files step and does not complete

A couple of days ago I started a large job ($33.35) to process DNA microarray data from 27,778 samples. The job more or less completed in 40hrs: The OUTPUTS tab has been populated and I can indeed...
- July 24, 2020 16:40
- 3 followers
- 8 comments
- 0 votes
Provide a way to flush and declutter the JOB HISTORY

I find my workspace with a very long JOB HISTORY: I cannot find a way to either remove past jobs or name jobs in a way that I can identify them. The only useful identifier I have from this list is...
- July 21, 2020 01:59
- 2 followers
- 1 comment
- 6 votes
Call input and runtime attributes evaluation failed for ...

When running a scatter job, I get error "Call input and runtime attributes evaluation failed for idat2gtc" The more verbose version of the error says: Failed to evaluate input 'disk_size' (reason 1...
- Edited July 21, 2020 00:26
- 2 followers
- 3 comments
- 0 votes
PreparingJob state consumes most of a task running time, how to avoid?

I am having tasks spending a lot of time in PreparingJob state. In the following figure: You can see the long tasks starting with a long light blue segment that is described as PreparingJob. The d...
- July 16, 2020 16:02
- 2 followers
- 8 comments
- 0 votes
Terra fails to delocalize files listed through read_lines()

I have a task that generates a list of files. The list of files looks like this: 4019585367_A.gtc4019585401_B.gtc4019585413_A.gtc4019585422_A.gtc4019585455_A.gtc4019585498_B.gtc4019585508_B.gtc4019...
- Edited July 14, 2020 21:45
- 3 followers
- 4 comments
- 0 votes
write_lines()/write_map()/write_tsv()/write_json() fail when run in a workflow rather than in a task

I have some code that tries to generate a table as a file and then send that file to a task. The code looks like this:File? reheader_file = if reheader then write_map(as_map(zip(barcode, sample_ids...
- Edited July 13, 2020 19:03
- 3 followers
- 4 comments
- 0 votes

Job Manager fails to provide more than one error message from the metadata

Job seems stuck indefinitely at the delete intermediate files step and does not complete

Provide a way to flush and declutter the JOB HISTORY

Call input and runtime attributes evaluation failed for ...

PreparingJob state consumes most of a task running time, how to avoid?

Terra fails to delocalize files listed through read_lines()

write_lines()/write_map()/write_tsv()/write_json() fail when run in a workflow rather than in a task