Emma Pierce-Hoffman
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Recent activity by Emma Pierce-Hoffman
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Totally agree with this request! The "Delete intermediate outputs" functionality has been very helpful to prevent the accumulation of storage! There is still a need for easier workspace cleanup fun...
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- 3 votes
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Hi Qiushi, I'm part of the GATK-SV team looking into your issue. We noticed that a number of inputs to the workflow are missing in the submission you linked, including genome_tracks, which is an in...
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- 0 votes
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+1 - we've asked for this before, it's really necessary. Agreed that the version tag & commit hash is what I'd like to see. Currently we have to record the version manually in the submission commen...
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- 1 vote
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For any future users encountering this issue, it was addressed in the comment thread here https://gatk.broadinstitute.org/hc/en-us/community/posts/33681801704347-Error-in-GATK-SV-joint-calling-terr...
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- 0 votes
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For future users who encounter this issue, this error was the result of running FilterBatchSites on fewer than 100 samples. The cohort mode of GATK-SV is designed for processing at least 100 sample...
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I just encountered this issue too. A colleague confirmed my fear: the length of the input JSON was too long for Terra to be able to submit the job (which fits with your observation that the error w...
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- 0 votes
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Strongly agree! I am in the same position where it would take me hours to go through all my workspaces and opt out individually, and I am running thousands of workflows so I really want to avoid ge...
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- 0 votes