User

Yifat Geffen

Member since
Total activity 8
Last activity
Following 0 users
Followed by 0 users
Votes 0
Subscriptions 2

Activity overview

Latest activity by Yifat Geffen

  • Yifat Geffen commented,
    1. Community
    2. General Discussion
    3. PAPI error code 2

    It seems for now that increasing the boot disk space is solving this error. and yes we are using the GATK4 somatic CNVs workflow. Thanks, Yifat

  • Yifat Geffen commented,
    1. Community
    2. General Discussion
    3. PAPI error code 2

    Hello Jason, Thanks for responding. We cannot share the workspace as this workspace contains restricted data. Do you have any suggestions as to the error source? Best, Yifat  

  • Yifat Geffen created a post,

    PAPI error code 2

    Hello, I am running into this recurring error while running the GATK CNV PoN workflow: I attached the error message below-  This is happening after increasing the disk space and the preemptibles. H...

    • Yifat Geffen
    • Edited
    • 4 followers
    • 6 comments
    • 0 votes
  • Yifat Geffen commented,
    1. Community
    2. General Discussion
    3. Error running GATK CNV PoN workflow

    Thank you, Jason, I posted it there.

  • Yifat Geffen commented,
    1. Community
    2. General Discussion
    3. Error running GATK CNV PoN workflow

    Thanks, Jason, In that case, I might try to reach out to the GATK team, I can't share the workspace as it contains CPTAC restricted data and needs special authorization. Best, Yifat  

  • Yifat Geffen created a post,

    Error running GATK CNV PoN workflow

    Hello, I am getting the following error once running the GATK4 standard CNV PoN creation workflow. The error states: Input files reference and reads have incompatible contigs: No overlapping contig...

    • Yifat Geffen
    • 2 followers
    • 4 comments
    • 0 votes