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PAPI error code 2

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6 comments

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    Liudmila Elagina

    This is also the Failure message we see:

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    Jason Cerrato

    Hi Yifat and Luda,

    Thank you for writing in about these. Can you share the workspace where you are seeing this issue with GROUP_FireCloud-Support@firecloud.org by clicking the Share button in your workspace (see the icon with the three dots at the top-right)?

    1. Add GROUP_FireCloud-Support@firecloud.org to the User email field and press enter on your keyboard
    2. Click Save

    Let us know the workspace name, as well as the relevant submission and workflow IDs. We'll be happy to take a look and get back to you as soon as we can.

    Kind regards,

    Jason

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    Yifat Geffen

    Hello Jason,

    Thanks for responding.

    We cannot share the workspace as this workspace contains restricted data.

    Do you have any suggestions as to the error source?

    Best,

    Yifat

     

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    Jason Cerrato

    Hi Yifat,

    Can you share the workflow ID(s) where you're receiving the error? We should be able to examine the error on the backend. It looks like there's a space issue specific to the docker. 

    Is the workflow you're using the very same from either Somatic-CNVs-GATK or Germline-CNVs-GATK, without modification?

    Kind regards,

    Jason

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    Yifat Geffen

    It seems for now that increasing the boot disk space is solving this error.

    and yes we are using the GATK4 somatic CNVs workflow.

    Thanks,

    Yifat

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    Jason Cerrato

    Hi Yifat,

    Thanks for letting us know. The boot disk not being big enough sounds about right for this issue since it was related to the docker. I'm glad you were able to figure it out!

    If there's anything else that's unclear, please let me know.

    Kind regards,

    Jason

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