User

Yosef Maruvka

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Activity overview

Latest activity by Yosef Maruvka

  • Yosef Maruvka created a post,

    Max running time

    Hello,How can I set the maximum time a job can run? Also, when using preemptible, can I force the job to stop when it reached the last and expensive attempt?   Thanks, Yosi

    • Yosef Maruvka
    • 2 followers
    • 1 comment
    • 0 votes
  • Yosef Maruvka commented,
    1. Community
    2. Known Issues
    3. Hanging Localization Step

    Hello,   I rerun jobs at 3pm yesterday that shouldn't take more than 2-4 hours. About half of them are still running. See here "pazlabtest/Colon_Cancer_Sam"   Can you please assist me downloading t...

  • Yosef Maruvka commented,
    1. Community
    2. Known Issues
    3. Hanging Localization Step

    Hello, I tried to increase the VM size but it did not help. I gave 250G for the localization of WES samples (~10G) and still the jobs were not running.Maybe instead of reimbursement, can you please...

  • Yosef Maruvka commented,
    1. Community
    2. Known Issues
    3. Hanging Localization Step

    Hi Jason, I aborted the runs that were hanging-out and I rerun them. The success rate with lower than in the first run, but it changed from 9 hanging-out runs to only 4. I tried to repeat the proce...

  • Yosef Maruvka commented,
    1. Community
    2. Known Issues
    3. Hanging Localization Step

    Thank Jason,   I shared the workspace "Permissions for broad-getzlab-starrlynch-terra/tag_696_Getz_Lipkin_STARR_LynchSyndrome_ULP-WGS_MSIDetect" with your email.   I sent a reimbursement email afte...

  • Yosef Maruvka commented,
    1. Community
    2. Known Issues
    3. Hanging Localization Step

    Hello Jason,   I have been analyzing WGS samples. While most of them finished after 10-15 hours some samples have been running more than two days, and ate still running. You can set it here. Please...