Benjamin Doran

1. Community
2. Completed Feature Requests
3. Workspace Lock

Thanks!

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• September 06, 2019 17:40
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1. Community
2. Completed Feature Requests
3. Workspace Lock

That sounds great! Our lab has been looking for a way, as papers are published and projects finish, to freeze workspaces. We need to keep all the scripts and data, so we don't want them deleted. It...

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• September 06, 2019 14:37
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1. Community
2. Completed Feature Requests
3. Workspace Lock

What is the "lock" feature. ( I came directly to terra, not through firecloud ). One feature our group would love is to set a workspace to read only and auto-coldstore all files in the workspace bu...

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• September 05, 2019 18:25
• 0 votes

1. Community
2. Active Feature Requests
3. FR: Allow owners to change the authorization domain on an existing or cloned workspace

Completely agree with this. Current setup is really unforgiving to mistakes in choosing authorization domains. And it is very unclear to users what authorization domains actually are, when they are...

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• September 05, 2019 18:09
• 1 vote

1. Community
2. Active Feature Requests
3. Multiple runtime environments per project

Not sure if this is the reason Elena wants multiple run times. But for me a big use case, and part of our reason for moving into the cloud is that our analyses can take a long time to run. It is re...

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• September 04, 2019 14:21
• 1 vote

1. Community
2. General Discussion
3. hdf5 in notebook cluster

Tested and confirmed! hdf5r is able to be installed in resulting cluster. It would still be useful to not need the startup script, but this should work for now.

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• May 16, 2019 15:29
• 0 votes

1. Community
2. General Discussion
3. hdf5 in notebook cluster

Seems like h5py might work because it is already precompiled. Main issue is that I am trying to get this data into Seurat which needs the hdf5r package to work...  I have tried using a startup scri...

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• Edited May 15, 2019 19:15
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1. Community
2. General Discussion
3. hdf5 in notebook cluster

This seems to work for installing hdf5 from a notebook %%bashmkdir -p ~/.hdf5cd ~/.hdf5gsutil cp gs://fc-fc0d5126-8840-4d53-801e-71f6c3ca07d6/hdf5-1.10.5.tar.gz .tar -xzvf hdf5-1.10.5.tar.gzcd hdf5...

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• May 14, 2019 20:43
• 0 votes

hdf5 in notebook cluster

Is there a way to get HDF5 installed on the notebook clusters without using sudo? It would be really great to not need a startup script. I need it for reading loom/h5ad files for single cell analys...

• Benjamin Doran
• May 14, 2019 18:45
• 3 followers
• 9 comments
• 0 votes