User

Katie Saund

Member since
Total activity 23
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Posts

Recent activity by Katie Saund

  • Rstudio unstable

    Hi All,  I'm using the Community Maintained Rstudio environment in Terra and keep running into different errors. These errors tend to crash the cloud environment or produce endless messages to the ...

    • 2 followers
    • 8 comments
    • 0 votes

  • Is is possible to run Rstudio + Spark Cluster?

    Is it possible to use a Rstudio + spark cluster on Terra?  I've been able to start a Spark cluster successfully with a Jupyter environment with the following setup: but I have not been able to do ...

    • 2 followers
    • 2 comments
    • 0 votes

  • AMP-PD access large data

    Hi,  I am working with the AMP-PD transcriptomics data. My goal is to save a sample x gene count matrix in my workspace bucket that I can use for RNAseq analyses using limma. I can create such a ma...

    • 1 follower
    • 1 comment
    • 0 votes

  • Tutorial for docker + Rstudio?

    I just started using the Community-maintained Rstudio environment. I am under the impression that this Rstudio environment is within a docker image that gets spun up each time I unpause my cloud en...

    • 2 followers
    • 1 comment
    • 0 votes

  • Can't install BioConductor Homo.sapiens in R notebook

    I'm working in the bioconductor docker container:  Most of the packages I need are pre-installed, but I also need Homo.sapiens.  I tried to install: But it won't install because of a "non-zero ex...

    • 2 followers
    • 3 comments
    • 0 votes