Katie Saund

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3. Is is possible to run Rstudio + Spark Cluster?

Thanks, Emil for your prompt response. I will get back in touch if I find a use case where Rstudio + spark cluster would be particularly useful.  Best, Katie

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• December 03, 2021 16:32
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3. Rstudio unstable

Hi Samantha,    Unfortunately, RStudio does keep crashing but I cannot generate a reproducible example. My Project ID is terra-df530ee7. Can you please tell me where I can find the cluster name in ...

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• January 14, 2022 20:56
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3. custom cloud environment

Thank you, Sehyun! I was using the Google Artifact Registry and it wasn't working. I just switched over to the Google Container Registry and that solved my problem.  Thanks again,  Katie

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• January 04, 2022 21:03
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3. custom cloud environment

Hi Jason and  Sehyun, Any success on getting a custom RStudio cloud environment based on the RStudio base image working? I'm trying to do the same task and get the same error as Sehyun:  The reque...

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• January 03, 2022 23:27
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3. Rstudio unstable

Hi Samantha,  Most of the time I only need to restart the R session. Sometime, however I need to restart the cloud environment (pause it and then restart it). I am not deleting the persistent disk ...

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• December 21, 2021 18:38
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3. Rstudio unstable

Thanks, Samantha!   A small update: this morning I started a fresh computing session and ran only the command library(DESeq2) and got the error message in the picture below in my console repeatedl...

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• December 17, 2021 19:14
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3. Rstudio unstable

Some error messages from the last week or so: Message 1: Message 2:    Message 3:    Message 4:   

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• December 16, 2021 21:59
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3. Rstudio unstable

Sorry to added images in a separate comment, but adding photos to the orignal post was deleting my text (so odd!). Here's my current computing environment: 

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• December 16, 2021 21:56
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3. AMP-PD access large data

Solution:   I was able to solve this issue by looping through the sample ids; for each run through a for loop in R I queried just a subset of the sample ids. I converted the query results from long...

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• December 02, 2021 20:57
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3. Can't install BioConductor Homo.sapiens in R notebook

Thank you, Samantha!   Deleting the current cloud environment and persistent disk then starting a fresh session resolved the issue. I just got Homo.sapiens installed.  It's good to know about this ...

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• November 17, 2021 23:45
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