Run workflow with data on gs://brain-genomics-public/
I want to run a workflow using bams sitting in a public domain. In this case, it is gs://brain-genomics-public/research/sequencing/grch37/bam/hiseqx/wgs_pcr_plus/30x/HG001.hiseqx.pcr-plus.30x.dedup.grch37.bam
I can see the download button from the data table, however, when I run the workflow It errors out immediately. The message here makes me think it is an
accessibility issue. My submission id is e9d29c1d-31f0-4097-86f3-58982616e1d1
Appreciate your help in advance!
Comments
4 comments
Hi Ruolin Liu,
Thanks for reaching out. Can you share the workspace where you are seeing this issue with GROUP_FireCloud-Support@firecloud.org by clicking the Share button in your workspace? The Share option is in the three-dots menu at the top-right.
Let us know the workspace name, as well as the relevant submission and workflow IDs. We’ll be happy to take a closer look as soon as we can.
Best,
Samantha
Thank you for looking into this! I just shared the workspace. Let me know if you still cannot see it.
workspace name
and the submission_id is
Hi Ruolin Liu,
Did you upload your data tables in the correct order, making sure to enable the option to 'Create participant, sample, and pair associations'? Read more about this here.
I tried cloning your workspace, deleting and re-uploading the data tables tables in order, and was able to successfully submit the workflow.
Best,
Samantha
Hi Samantha,
Thank you for the help! I am able to run it now.
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