Ruolin Liu

Member since April 26, 2021 18:57

Total activity 11

Last activity January 06, 2023 15:21

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Votes 2

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Activity overview

Latest activity by Ruolin Liu

Ruolin Liu commented, January 06, 2023 15:19
Hi Team, I think I am encountering a related or at least similar issues. Some of my jobs randomly failed and it says provided dockerhub token dckr_pat_VtwtNSVx4Z856zlkXKJ0Adqhl4E is not a base64-...
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- Edited January 06, 2023 15:21
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Ruolin Liu commented, April 30, 2021 15:13
Hi Samantha, Thank you for the help! I am able to run it now.
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- April 30, 2021 15:13
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Ruolin Liu commented, April 28, 2021 16:36
Thank you for looking into this! I just shared the workspace. Let me know if you still cannot see it. workspace name blood-biopsy/bb-Mutect2-Gatk4, and the submission_id is e9d29c1d-31f0-4097-8...
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- April 28, 2021 16:36
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Ruolin Liu created a post, April 28, 2021 13:10
Run workflow with data on gs://brain-genomics-public/

I want to run a workflow using bams sitting in a public domain. In this case, it is gs://brain-genomics-public/research/sequencing/grch37/bam/hiseqx/wgs_pcr_plus/30x/HG001.hiseqx.pcr-plus.30x.dedup...
- Ruolin Liu
- April 28, 2021 13:10
- 2 followers
- 4 comments
- 0 votes
Ruolin Liu commented, April 27, 2021 01:19
Thank you Jason! Do you know this line here `environment : MEM_SIZE : 4GB` is memory per CPU or total memory for the instance?
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- April 27, 2021 01:19
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Ruolin Liu commented, April 26, 2021 18:57
A related question. After a job fails, how do I check the disk or memory usage for my job? I have a job that keeps failing and I am pretty sure it is either a disk problem or a memory problem. I've...
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- April 26, 2021 18:57
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Run workflow with data on gs://brain-genomics-public/