Andrew Davidson
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Recent activity by Andrew Davidson
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Hi Samantha I suspect that the reason for the error code 137 was because memory was exhausted and terra ignored my 'runtime' configuration. My ref index must be loaded into memory. It is 19 GB. Not...
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Hi Samantha I think you should have access now. The sharing UI is not obvious. before I just cut and paste the email address and clicked on the "save" button. I missed the detail about needing to h...
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Hi SamanthaI create a sharable workspace that does not have user identifiable information. I still have the same errorPlease see the comments on the Dashboardhttps://app.terra.bio/#workspaces/test-...
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Let me see if I can create reproduce the bug in a new workspace using samples I can share Andy
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I tried running with 32 gb of memory and 80gb of disk. I still get the same error
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Hi Samantha sorry I can not share the workspace. The data comes from GTEx and has subject identifiable information. I can zip up any of the files in the execution bucket if you like Can you tell ...
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https://api.firecloud.org/ga4gh/v1/tools/aedavids.ucsc.edu:SalmonPairedReadQuantTask/versions/5/plain-WDL/descriptor
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Hi Sushma thanks for the tip. I think there is a bug in Cromwell. if you comment out a line in your bash task, Cromwell will still try to expand it. this will cause an error if the variable is not ...
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Hi Samantha Thinking a little bit more about this. The time to add the batch metadata is when I run the workflow. Maybe that web page could add a field for capturing a user-friendly name and some f...
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LOL! Thanks Andy
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