Jason Ni

1. Community
2. General Discussion
3. Joint Genotyping on Terra issue with accessing external buckets for importGVCFs task in GATK. [error code 400]

Error changed to:  code: 400 message: Bucket is a requester pays bucket but no user project provided. reason: required location: null retryable: false Since the gsutil -u method work for...

• View comment
• October 11, 2022 17:07
• 0 votes

1. Community
2. General Discussion
3. Joint Genotyping on Terra issue with accessing external buckets for importGVCFs task in GATK. [error code 400]

Update: Trying https://portal.firecloud.org/?return=anvil#methods/jcerrato/JointGenotyping_v1.5.1_RPbuckets/2  

• View comment
• October 11, 2022 17:03
• 0 votes

1. Community
2. Known Issues
3. Requester Pays Google buckets not asking for project to bill

Hi! I could confirm that this approach works indeed to cp from requester pays bucket. But when I run the gatk joint genotyping script, I get this error code 400 Picked up _JAVA_OPTIONS: -Djava.io.t...

• View comment
• October 11, 2022 16:27
• 0 votes

1. Community
2. General Discussion
3. SRA Cloud Delivery

Hi Jason, Thanks for responding. I'd prefer to follow up with a private email chain. I didn't register a service account myself. In the SRA Cloud delivery option: https://trace.ncbi.nlm.nih.gov/Tra...

• View comment
• February 02, 2022 15:34
• 0 votes

1. Community
2. General Discussion
3. SRA Cloud Delivery

Hi Anika, I am currently delivering data from dbGaP to a bucket belonging to a workspace I've created. I've tried to add: csvm-service@nih-sra-datastore.iam.gserviceaccount.comcsvm-service@nih-sra-...

• View comment
• February 02, 2022 00:31
• 0 votes