Giulio Genovese
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Recent activity by Giulio Genovese
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Okay! There is no immediate hurry on my side. I am very happy to know that a solution is in the making. I know I am pushing the limits of Terra a bit, but overall I have been very positively impres...
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As it is relevant to this post, I will mention that another possible solution to requiring that the list of output files be computed ahead of the task starting is to have the suffix() function impl...
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Thank you Khalid. I am fine for this particular workflow. I wrote the WDL and I know exactly what it does so I know how to handle this. I am more worried about this happening to other users that wi...
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It looks like someone did something ... the job used to say "Started Jul 22, 1:20 AM" and now it says "Started: Today, 5:33 PM" and "Ended: Today, 5:34 PM (0h 0m)": And it claims to have failed wh...
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I am happy to say that the PreparingJob wait time is completely gone from my pipeline(!). I do have a lingering question though. Does it take longer to estimate the size of a file if it is in a mul...
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If that's the case, there is an easy solution. Those files are all the same size anyway, so I can just change that code to: Float gtc_size = length(gtc_files) * size(gtc_files[0], "GiB") If this ...
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I see, so this is a Cromwell issue rather than a Terra issue. I think I am too swamped right now to take on me another task. Thank you for the explanation though.
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Can I have some more information about what job metadata I should try to minimize? Is it the metadata passed between workflow and tasks that is overwhelming the job manager? I can take some steps t...
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I don't understand. I went to this page: http://portal.firecloud.org/#workspaces/mccarroll-mocha-terra/mocha Then had to switch to the legacy interface (which is so much better than Terra interface...
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I am having the same issue: Submission ID: 84b157be-a26e-40e6-9f6e-5af12b39976f Workflow ID: 5029f6c6-2069-449d-9a70-38afd5450366 I was able to monitor the job until it failed. I know it failed be...
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