Giulio Genovese

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2. Known Issues
3. 'Quota exceeded' error for GCR pulls (Workflows)

Maybe time to implement in Cromwell/Terra a system to cache docker images when running large arrays of tasks? (similarly to what is done when running Cromwell with HPC shared filesystem environment...

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• January 19, 2024 21:42
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3. Job Manager fails to provide more than one error message from the metadata

Thank you! 🙏

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• July 19, 2022 15:35
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1. Community
2. Active Feature Requests
3. Job Manager fails to provide more than one error message from the metadata

I did notice that the Workflow Dashboard reports all error messages, which is good. For my own personal use I also know how to download the metadata through the API. I am mostly worried about users...

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• July 14, 2022 19:14
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Job Manager fails to provide more than one error message from the metadata

Some of the users of my workflows are having a hard time debugging a workflow when providing incorrect inputs. I have managed to create a minimal workflow that exposes the problem: version 1.0workf...

• Giulio Genovese
• Edited July 13, 2022 01:16
• 5 followers
• 8 comments
• 3 votes

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2. General Discussion
3. Workflow failure: "Workflow is making no progress but has the following unstarted job keys"

I wanted to mention that I have encountered the same issue last Saturday night / Sunday morning while running a workflow on GCS with my own instance of Cromwell. I have reported the problem here.

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• March 31, 2021 02:14
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2. General Discussion
3. map Array[File] to Object[samplename, Array[Files] based on filename

The appropriate way to group/aggregate elements of an array is to use the collect_by_key() function although this is only available in WDL development version. As an example, the following WDL: ver...

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• December 23, 2020 16:40
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3. cromwell file permission declined

I think the problem is simply that in the code: python /usr/local/bin/sample_sheet \ "${inputFile}" You left a space after the "\" character, so it is not interpreted as a line continuation.

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• September 27, 2020 16:08
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3. Job seems stuck indefinitely at the delete intermediate files step and does not complete

Super! That's awesome and very timing. Thank you Jason! :-)

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• August 19, 2020 21:48
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2. Completed Feature Requests
3. Support workflows with more than 50,000 nodes

I looked at the code and the error is generated from the ScatterKey.scala file: if(scatterSize > maxScatterWidth) { workflowExecutionActor ! JobFailedNonRetryableResponse(this, new Exception(s"Wor...

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• August 12, 2020 22:58
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