Kathleen Morrill
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Recent activity by Kathleen Morrill
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The second approach, feeding bcftools write_lines(${inputSetVCF}), does indeed make a .tmp file containing a localized input per line. But the workflow errors out there, throwing "Array value was g...
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I'll try that out later!I've run into a different problem with the merge workflow. Trying to get BCFtools to accept my Array[File] for input to merge. Done in this way, write_lines is making a file...
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I ended up splitting into two workflows, filter VCF workflow for individual samples and a merge VCFs workflow for sample sets, which seems to be the better approach!But, still might be curious abou...
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Ok, update, this appears to have just been a WDL versioning issue. Declaring version 1.0 at the top of the WDL allowed for struct definitions but other syntax had to change like input {} wrappers f...
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Found a solution! Rather than inputting existing attributes and outputting those, I set the Task for if(!download) to run the command `exit 1`, forcing a fail state for the workflow. Failed workflo...
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So, I have tried the solution of requesting the current data model attributes as outputs for a task that runs only if !download. However, I've found that the successful workflow will attempt to upd...
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Thank you!Another suggested feature request, which might help with the same goal in mind, is the ability to sort the data model by multiple columns when selecting samples for a sample set. That way...
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Thanks Samantha, I have added the support email to the workspace. Here is the workspace name: Dog Aging Project - Sequencing DataThe following submission has examples of samples for which the con...
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Hi, I am just now getting started with using docker images on workflows. Is this notice still active? Does this apply to images pushed to Dockerhub that use a GCS-hosted base image?
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