Derek Caetano-Anolles

Uncovering structural variation with the GATK-SV pipeline [February 13, 2023]

On February 13, 2023, the Broad Institute's Data Sciences Platform presented a 4-hour workshop on Uncovering structural variation with the GATK-SV pipeline, in which we walked through the GATK-SV p...

• Derek Caetano-Anolles
• Updated February 14, 2023 18:33
• 1 follower
• 0 comments
• 0 votes

How to save data from an interactive analysis to workspace storage

For longer-term storage of files generated from an interactive Cloud Environment (i.e. JupyterLab), you can copy them from your local storage disk to the workspace blob storage. This will prevent a...

• Derek Caetano-Anolles
• Updated January 25, 2023 18:00
• 1 follower
• 0 comments
• 0 votes

JupyterLab Quick Tips

JupyterLab is very powerful once you are familiar with the basics, but it also offers lots of additional benefit once you see what else is possible. Here are some shortcuts and helpful hints when u...

• Derek Caetano-Anolles
• Updated January 25, 2023 16:48
• 1 follower
• 0 comments
• 0 votes

How to customize and launch JupyterLab

Jupyter Notebooks run on virtual machines (VMs) or clusters of machines in your Jupyter Cloud Environment. You can adjust the configuration of your Jupyter app to fit your computational needs.  Th...

• Derek Caetano-Anolles
• Updated March 09, 2023 20:32
• 1 follower
• 0 comments
• 0 votes

How to create a table from scratch

Once you have brought your own data into your Terra on Azure workspace blob storage or have URLs to Azure-hosted open-access data, you can organize it in a data table by generating and uploading a ...

• Derek Caetano-Anolles
• Updated February 16, 2023 18:50
• 1 follower
• 0 comments
• 0 votes

How to collaborate in a shared workspace

"Sharing" a workspace allows collaborators to actively work together in the same workspace. Sharing a workspace lets you see what sorts of changes your colleagues implement, troubleshoot efficientl...

• Derek Caetano-Anolles
• Updated February 07, 2023 17:43
• 1 follower
• 0 comments
• 0 votes

How to clone your own workspace

Learn how cloning a workspace makes an independent copy of the workspace under your own Terra Billing project. Since you are the owner and sole user (until you choose to "share" your copy with some...

• Derek Caetano-Anolles
• Updated January 25, 2023 13:05
• 1 follower
• 0 comments
• 0 votes

1. Platform status and updates
2. Release Notes
3. June 01, 2020

That's a good point, Philipp Hahnel; thanks for the question — I've discussed it with the team, and we will be making updates to the documentation soon.

• View comment
• November 22, 2021 16:02
• 1 vote

November 9, 2021

The following release notes correspond to October 26, 2021 - November 9, 2021. In addition to these changes, this release includes back-end updates to workflows and Google integrations to improve u...

• Derek Caetano-Anolles
• Updated December 23, 2022 20:24
• 1 follower
• 0 comments
• 0 votes