Elizabeth Sheets
Posts
Recent activity by Elizabeth Sheets
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switch email account associated with Terra?
Hello, I am changing jobs and will lose access to my current employer-sponsored email account. Is it possible to switch to another google account and retain access to my Terra account or do I need ...
- 2 followers
- 2 comments
- 0 votes
- Answered
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Hail container package issues
The current Hail container (Python 3.7.9, hail 0.2.62) doesn't interact well with Pandas. I was able to solve the errors by installing `fsspec` and upgrading `gcsfs` (current install is 0.2.2 and t...
- 2 followers
- 10 comments
- 0 votes
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Using IGV data table widget with controlled access CRAM/CRAI files?
I am trying to use the IGV widget available in Terra's data table with CRAM and CRAI files that have been copied to my bucket. When I load the IGV tool with the sample and zoom in, I continue to ge...
- 2 followers
- 3 comments
- 0 votes
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Hail notebook error: Consider boosting spark.yarn.executor.memoryOverhead
I am trying to write a hail matrix to my workspace bucket and the job is not completing. I am getting this error: Hail version: 0.2.11-daed180b84d8Error summary: SparkException: Job aborted due to...
- 3 followers
- 3 comments
- 0 votes
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R notebook error: installation path not writeable
When using your default R notebook configuration, I am getting an error that I cannot update dependency packages using BiocManager because the installation path is not writeable. I am also unabl...
- 3 followers
- 4 comments
- 0 votes