
Elizabeth Sheets
Activity overview
Latest activity by Elizabeth Sheets
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Elizabeth Sheets commented,
Thanks, Samantha!
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Elizabeth Sheets created a post,
switch email account associated with Terra?
Hello, I am changing jobs and will lose access to my current employer-sponsored email account. Is it possible to switch to another google account and retain access to my Terra account or do I need ...
- Elizabeth Sheets
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Elizabeth Sheets commented,
I can also invite you to my workspace (it's using open-access data) if that's easier.
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Elizabeth Sheets commented,
Hi Jason, I don't think so, this notebook is public if you want to see if you can recreate the issue there: https://app.terra.bio/#workspaces/biodata-catalyst/BioData%20Catalyst%20GWAS%201000%20Gen...
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Elizabeth Sheets commented,
I am getting the error when trying to use read_csv():
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Elizabeth Sheets created a post,
Hail container package issues
The current Hail container (Python 3.7.9, hail 0.2.62) doesn't interact well with Pandas. I was able to solve the errors by installing `fsspec` and upgrading `gcsfs` (current install is 0.2.2 and t...
- Elizabeth Sheets
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Elizabeth Sheets commented,
Hi Jason, Our BDC learning material asks users to consider publishing their tools and workflows on Dockstore and they use a lot of learning material from Dockstore to write their first descriptor ...
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Elizabeth Sheets commented,
Sushma, can I request that Terra reconsider this request to make Dockstore tools available in Terra? We have had BDCat several users get confused when registering their pipelines as tools and not b...
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Elizabeth Sheets created a post,
Using IGV data table widget with controlled access CRAM/CRAI files?
I am trying to use the IGV widget available in Terra's data table with CRAM and CRAI files that have been copied to my bucket. When I load the IGV tool with the sample and zoom in, I continue to ge...
- Elizabeth Sheets
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Elizabeth Sheets created a post,
Hail notebook error: Consider boosting spark.yarn.executor.memoryOverhead
I am trying to write a hail matrix to my workspace bucket and the job is not completing. I am getting this error: Hail version: 0.2.11-daed180b84d8Error summary: SparkException: Job aborted due to...
- Elizabeth Sheets
- 3 followers
- 3 comments
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