lck
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Recent activity by lck
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Yes, that's correct. The only thing I changed was the "continueOnReturnCode" part of the standard_runtime variable. One that worked before this change (up until the funcotate error) is workflow ID ...
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They're in a different workspace, with the data, but the submission ID is 021efe5a-8eb3-4c67-b9d5-a8ec2b6409fe and the worflow ID is 64eb99b6-1421-486b-b6aa-a19fdb0bc300. Thanks!
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Hi Jason -- unfortunately, I can't share the data I used under our current IRB. I'm sorry, I know this makes it difficult. I did copy the workflow to this workspace and shared access, but I can't r...
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GE, I ended up getting it to run by switching the version to 2.7 -- whatever new was introduced in Cromwell v48 was handled appropriately by version 2.7 of the workflow. My previous runs used versi...
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Hi Jason Cerrato, it's a regulatory/data security issue for the project -- we're not supposed to share the files with people outside of my institution, although we have permission to upload them to...
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(Also, Matthew Miller, I think you meant to leave your comment on your thread instead...)
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Jason Cerrato, the workspace has bam files that can't be shared -- is there some other option by any chance, or a way I can share without sharing the workspace data? Thanks.
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Thank you both -- I have it working now!
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Thanks so much, Adelaide. I tried to follow your instructions, but still got the error: First column header should start with "workspace" So, I created a file like this: workspace:interval_id ...
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