User

Alisa Manning

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Activity overview

Latest activity by Alisa Manning

  • Alisa Manning created a post,

    Managing cloud environments created by multiple users of a workspace

    As an owner of many Billing Accounts and Workspaces, I manage the costs of each workspace. I often add users to groups that have Compute Access to a workspace. I also often grant "Compute Access" t...

    • Alisa Manning
    • 2 followers
    • 1 comment
    • 0 votes
  • Alisa Manning created a post,

    Error launching analysis - bug?

      I need help interpreting this error. Scenario: I have submitted a job successfully. I go back to the Method Config, change one of the input parameters to a different workspace variable, try to s...

    • Alisa Manning
    • Edited
    • 3 followers
    • 4 comments
    • 0 votes
  • Alisa Manning commented,
    1. Community
    2. General Discussion
    3. Implementing Subworkflows

    Thank you!

  • Alisa Manning commented,
    1. Community
    2. General Discussion
    3. Implementing Subworkflows

    This begins to clarify things. I think I understand from this example how the inputs to subworkflows work. I write my own WDLs, and I am tried to implement a "double scatter" which resulted in a Te...

  • Alisa Manning created a post,

    Implementing Subworkflows

    I'm looking for documentation on implementing subworkflows in Terra. What is the correct syntax for the WDL -- the specification (https://software.broadinstitute.org/wdl/documentation/spec#sub-work...

    • Alisa Manning
    • 2 followers
    • 4 comments
    • 0 votes
  • Alisa Manning commented,
    1. Community
    2. General Discussion
    3. Format of the custom table for the flexible data model

    Can you clarify the steps for making a "sets" or a collection of entities within this flexible data model framework? What is the required format (and file / column names) for the example above? How...

  • Alisa Manning commented,
    1. Community
    2. General Discussion
    3. Notebook startup actions

    Thanks! This is very helpful. The missing piece is what happens when you re-start a paused cluster and re-connect to a Notebook. Does the R environment get saved to an object at 'cluster pause' and...

  • Alisa Manning created a post,

    Notebook startup actions

    What are the "behind the scenes" actions that occur when I start up an R kernel in a Terra Notebook? For instance, when I started an R notebook today, objects were automatically loaded into memory ...

    • Alisa Manning
    • 2 followers
    • 3 comments
    • 0 votes
  • Alisa Manning commented,
    1. Community
    2. General Discussion
    3. SSH into submission instance

    How can we SSH to a Notebook VM? I'm running an analysis within a Jupyter Notebook, and I like to have a terminal open to monitor processes with 'top' and run small bash commands while the Notebook...