Stephen Fleming
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Recent activity by Stephen Fleming
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Thank you!
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Hi Jason, I wanted to weigh back in since I realized I never responded to your last question two years ago :) When I re-created my Cloud Environment, things did improve to a large extent. However,...
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Thanks for this post! It was confusing to me that when I would "recreate" my runtime using a docker image, I would find that the same package installation problems had followed me to the new runti...
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Hi Jason, Okay, the example WDL you sent is very helpful. I wasn't sure if any computation could be done in the workflow block, but the example shows that WDL standard library commands can be exec...
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Thanks Jason! With a suggestion from Luca D'Alessio, I have attempted this, which seems to work: BUCKET=$(cat gcs_delocalization.sh | grep -o '"gs:\/\/.*/call' | sed 's/\/call/"/' | head -n 1) ...
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Okay thanks!
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runtime { ... monitor_image: quay.io/broadinstitute/cromwell-monitor} I believe you can do the above in a WDL, but then I am not clear on how to get the results. Denis Loginov any tips on ho...
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I don't know the best answer, but just wanted to throw a couple links up here for the next time I search for this: https://github.com/broadinstitute/dsp-scripts/blob/master/cromwell/methods/cromwel...
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Hi Jason, Yeah, I was a bit vague there. I was mainly referring to the fact that we have several workflows internally that all require particular versions of particular tools. As some of the tool...
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Hi Jason, One more note that may be helpful to others who read this... I have noticed very recently that some of the time when I get this error, my laptop has jumped onto a different wifi network (...
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