User

Alexander Bick

Member since
Total activity 13
Last activity
Following 0 users
Followed by 0 users
Votes 5
Subscriptions 4

Activity overview

Latest activity by Alexander Bick

  • Alexander Bick created a post,

    Terra notebook cluster size

    I am seeking to setup a spark cluster to run a Terra notebook on for use with HAIL. It seems that the maximum number of workers/premptible nodes that can be requested is 20. Is there a reason for t...

    • Alexander Bick
    • 2 followers
    • 1 comment
    • 0 votes
  • Alexander Bick commented,
    1. Community
    2. Completed Feature Requests
    3. Specify and delete intermediate files

    I completely agree! Standard GATK workflows on Terra generate a lot of intermediate files that are often equal in size if not larger to the input and output files  -- and that storage cost adds up ...

  • Alexander Bick created a post,

    Hog Factors on Terra

    I have recently run several workflows on ~2000 samples which scatter across 5-20 intervals. A large number of these tasks are getting stuck in "QueuedInCromwell" status for >5 hours. I believe this...

    • Alexander Bick
    • Edited
    • 2 followers
    • 2 comments
    • 0 votes
  • Alexander Bick commented,
    1. Community
    2. Active Feature Requests
    3. Customize workflow input user interface

    I have the same challenge as Tiffany ... using a default WDL (for example https://dockstore.org/workflows/github.com%2Fgatk-workflows%2Fgatk4-somatic-snvs-indels%2Fmutect2_nio) there are ~100 field...