Liudmila Elagina

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2. Known Issues
3. Hanging Localization Step

Hello Jason and Adam,   I ran a few pairs through our regular CGA pipeline and it seems the fix that Google has implemented fixes hanging issue. I also figured out why my disk size didn't increase ...

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• February 13, 2020 20:45
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1. Community
2. Known Issues
3. Hanging Localization Step

Hello Adam,   This is great news. I am sure will try it out. I will double-check why the size of my VM was 60GB instead of 600GB.   Thank you,Luda

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• February 11, 2020 19:55
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1. Community
2. Known Issues
3. Hanging Localization Step

Hello Adam,   Thank you for this update. Is this the only solution Google offers us for this issue or there is a plan to roll back their updates that caused it in the first place? The easiest solut...

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• February 03, 2020 22:43
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1. Community
2. Known Issues
3. Hanging Localization Step

Hello Jason,   I just wanted to check-in to see if there are any updates on the solution for this issue.   Thank you, Luda

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• February 03, 2020 16:50
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1. Community
2. Known Issues
3. Hanging Localization Step

Hello Jason,   I am currently running GATK workflow called CNV_Somatic_Pair_Workflow on 71 pairs and I encountered the same hanging issue. Task called CollectCountsTumor has been running for 4 hour...

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• January 27, 2020 21:21
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1. Community
2. General Discussion
3. Unending localization step

Hello Kenneth and Jett,   You can follow updates on this issue here: https://support.terra.bio/hc/en-us/community/posts/360056045911-Hanging-Localization-Step?page=1#community_comment_360009039632 ...

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• January 21, 2020 19:34
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3. Hanging Localization Step

Hello Sushma,   Jason stated that the latest addendum was tested before the release. How come they have not encountered the same issue? I just run it on 5 pairs.  This is a crucial part of our anal...

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• January 21, 2020 19:25
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2. Known Issues
3. Hanging Localization Step

Tasks have been now for 2 hours at the "Localization script execution complete." step.

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• January 21, 2020 19:10
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1. Community
2. Known Issues
3. Hanging Localization Step

Hello Jason,I restarted workflows today (Tuesday) after the implementation of the addendum and still, there is a hanging issue. Localization of files has completed in 30 minutes and the task has be...

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• January 21, 2020 18:29
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1. Community
2. Known Issues
3. Hanging Localization Step

Hello Jason,   Thank you for the update. Unfortunately, the addendum also did not fix this issue. Attached is a screenshot of the scatter task being stuck for almost an hour at the localization ste...

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• January 16, 2020 22:53
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