Brian Granger
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Latest activity by Brian Granger
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Brian Granger commented,
Any hope of getting a record of what version was used on a particular job submission? Or is this there already and I'm missing it?
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Brian Granger created a post,
PAPI Connection error 500 Internal Server Error
Today I've been getting a handful of errors of tasks failing due to a 500 Internal Server Error. The message is: message: Unable to complete PAPI request due to system or connection error (500 In...
- Brian Granger
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- 1 vote
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Brian Granger commented,
I second this, and would also suggest a secondary feature of recording the cromwell version in the job history for each submission.
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- 2 votes
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Brian Granger commented,
@Owen Wilkins, not a dumb question. maxRetries and preemptions are something you set on a task level, so it's something in the method, not the workspace. Specifically it's something that's specifie...
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Brian Granger commented,
I limited it to CPU metrics and we have this now: I've been sorting them either by 7 day peak or current usage, so the things further down the page shouldn't hit as high.
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Brian Granger commented,
Hi Tiffany, Thanks for looking into it. I definitely wouldn't mind an earlier warning for anything that might go wrong, so I think working on that regardless would be good. However, I don't belie...
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Brian Granger commented,
I've given that email access to broadtagteam/CNVcaller. One of the jobs has since started, but I believe the latest is still waiting to run.
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Brian Granger created a post,
Jobs claim to be running, but no activity creating a stdout, stderr, or log file
We've started some jobs, and firecloud / terra claims that the jobs have started running, but from what I can see (mostly from firecloud) the bucket has been created, but there's be no activity to ...
- Brian Granger
- 3 followers
- 9 comments
- 1 vote
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Brian Granger commented,
Hi Sushma, I'm having this same error. Though mine seems pretty persistent. I don't think I've ever had it succeed after retrying, but it works sometimes on other datasets, and if I process it ou...
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