Chet Birger
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Recent activity by Chet Birger
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Jason, I ran the workflow yesterday. The mutect1 scatter jobs used a local SSD disk that was not over-provisioned. (Changing back to HDD would have required a WDL change, and I didn't have the ti...
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Yes, Romanos and Luda in our lab also reported having this issue. I will look into expanding the size of the disks, or changing to SSD. -Chet
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Done. The workspace URL is : https://app.terra.bio/#workspaces/broad-firecloud-cptac/CBB_20191122_hg38_wes_char_pipeline_LUAD I see this alot. Here is a submission ID in which it occurred: 15b215...
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I am able to see job status now. Thanks for following up! -Chet
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Thanks Jason. Not a high-priority issue as I am able to obtain job status through the FireCloud GUI. -Chet
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I am also again experiencing a workflow submission that is stuck waiting in queue. -Chet
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Not experiencing any issues currently. Thank you for looking into this. Is there a way of monitoring the queue or reporting an estimated wait time in queue? thanks, Chet
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It began processing after sitting in queue for an hour and 20 minutes. Was there a known issue that caused this delay?
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What is the status of this issue? It is effectively preventing us from running our production somatic variant calling workflows and directly impacting several of our research projects. In additio...
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It is working now. My attempts to run the workflows must have coincided with the methods repo downtime. thanks, Chet.
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