Geraldine Van der Auwera
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Activity overview
Latest activity by Geraldine Van der Auwera-
Geraldine Van der Auwera created an article,
[PAST EVENT] WiDS Cambridge@Broad 2020: How data science helps fight COVID-19
On May 21st, 1-3pm ET Broad Institute's Data Sciences Platform hosted a virtual Women in Data Science (WiDs) regional event. You can now watch this event on YouTube channel. First, Marissa Fisher...
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Geraldine Van der Auwera created an article,
A textbook for life sciences in the cloud
I remember when I originally started hearing about Docker containers; I didn't really understand what they were and anything I googled on the topic seemed awfully complicated. And I'll admit, getti...
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Geraldine Van der Auwera created an article,
Funding opportunity: Analyze TOPMed and GTEx datasets with support from NHLBI BioData Catalyst
It’s the holidays, which means the season of giving is here. And we’re excited to hear that our Data Biosphere partners over at the National Heart, Lung, and Blood Institute (NHLBI) are leading the...
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Geraldine Van der Auwera created an article,
New file paths for TARGET and TCGA workspaces
Heads up if you use the TARGET and/or TCGA data workspaces: we're planning an update that will change the paths to the data files. This will disable access to the original files in any clones of th...
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Geraldine Van der Auwera created an article,
Is the Terra platform down?
Despite our best efforts to keep Terra running smoothly, you may occasionally experience issues that suggest the system may be malfunctioning. Signs of malfunction are things like not being able to...
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Geraldine Van der Auwera created an article,
Install Docker and test that it works
Contents Get and install the software Test that the program runs Identify yourself Get an image and run a container Troubleshooting 1. Get and install the software Follow the relevant link below...
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Geraldine Van der Auwera created an article,
Service Incident - September 9, 2019 - TCGA datasets (hg19 version) unavailable
Summary Starting Monday 09 September 2019 at 5 PM EDT, the data listed in the older TCGA workspaces (aligned to hg19) became unavailable in Terra/FireCloud. See the Timeline section for the latest ...
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Geraldine Van der Auwera created a post,
Terra Open Science Contest - You be the judge!
Earlier this month, we challenged the Terra community to share their work in open workspaces to promote computational reproducibility and FAIR principles. In the spirit of rewarding good work, we m...
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Geraldine Van der Auwera created an article,
Upgrade to the workflow system coming soon: heads up on possible side effects
When you launch a workflow in Terra, there's a lot that happens behind the scenes to get the work done. Usually you don't need to care about any of it, but we're about to release a system upgrade t...
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Geraldine Van der Auwera created an article,
Scheduled Maintenance - March 20, 2019 from 6:30-7:00 AM EST
Summary We're planning to upgrade one of the main servers at the heart of Terra in order to unlock some performance enhancements ahead of a training event that is taking place later this week. We p...